Random Code Snippets
Heatmap Colormaps!
Examples of good colormaps to use for heatmaps, both divergent and incremental.
Cairo and XQuartz in Mac GitHub Actions
Including cairo and xquartz in MacOS github actions
Pie Charts in RCy3
How to represent nodes as pie charts using Cytoscape and RCy3
Dplyr in Packages and Global Variables
How to include dplyr in a package, and avoid warnings around global variables.
Reusing ggplot2 Colors
When you want to reuse ggplot2 default colors across plots.
Zooming GGraph Plots
Some code demonstrating how to zoom into portions of a ggraph.
R CMD Check and Non-PDF Vignettes
R CMD Check complaining about missing files? Here was my solution.
Random Forest Classification Using Parsnip
How to make sure you get a classification fit and not a probability fit from a random forest model using the tidymodels framework.
Coloring Dendrogram Edges with ggraph
Here is how I got edges colored in a dendrogram with ggraph. Use "node." in front of the node data column you want.
Keeping Figures in an Rmd -- Word Document
How to make your rmarkdown to word conversion also generate a directory of figures.
Highlighting a Row of A ComplexHeatmap
A simple way to highlight or bring attention to a row or column in a ComplexHeatmap.
Random Code Snippets
Introducing random-code-snippets.
Creating Custom CDFs for Affymetrix Chips in Bioconductor
Examples of messing with Affymetrix CDF data in Bioconductor.
Package Version Increment Pre- and Post-Commit Hooks
Two git commit hooks for incrementing the package version as part of commits.
Custom Deployment Script
I don't want to use Netlify for hosting, so I came up with this simple script to deploy my blog.